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Research
 Coastal
processes
Conservation
& biodiversity
Marine
biotechnology
- Bioactive
discovery
- Bio-innovation
- Tropical
aquaculture
Shrimp MAP
-
Introduction
-
Background
-
Invitation
-
Resource project
-
Progress report
-
Current status
-
Outputs
Shrimp EST
- Introduction
- Current
status
Resources
ProjectNET
for schools
Links
to relevant sites
Research
plan 2007-11
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Current
status
of the Penaeus monodon linkage map, March 2004
| |
Male Map |
Female
Map |
|
Number of markers on the map |
112 |
77 |
|
Number of linkage groups |
36 |
29 |
|
Number of linkage groups with 3 or more markers |
22 |
15 |
|
Total length of linkage groups (cM) |
878 |
630 |
|
Average space between 2 markers (cM) |
7.8 |
8.2 |
|
Average length of linkage group (cM) |
24.4 |
21.7 |
|
Average no. of markers per linkage group |
3.1 |
2.7 |
The
male map
Note:
Red highlights refer to
microsatellite markers, blue to EPIC markers, green to SSCP markers
and pink to SNP markers.
The
female map
The haploid chromosome
number of P. monodon is 44 and hence additional linkage
groups need to be identified to obtain complete genome coverage.
In addition, it is likely that some of the existing linkage groups
will coalesce as more markers are added.
However, progress is now
likely to be rapid as there are already sufficient markers that
new markers are incorporated into the map at a rapid rate.
| |
Male 1:1 AFLP markers |
Female 1:1 markers |
Micro-satellites |
SSCP markers |
EPIC markers |
SNP markers |
|
Number scored |
173 |
109 |
12 |
6 |
2 |
1 |
|
Number mapped |
100 |
62 |
9 |
3 |
1 |
1 |
|
Percentage mapped |
58% |
57% |
75% |
50% |
50% |
100% |
December 18, 2008
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