THE SECRET WORLD OF MARINE MICROBES

The marine organism that supports all others

They make up 98% of the biomass of the world’s oceans. They supply more than half the world’s oxygen. They are the major processors of the world's greenhouse gases and our greatest hope for mitigating the effects of climate change. They are the cause of diseases which are suspected to be spreading due to global warming, yet paradoxically they may hold a cure for cancer and the solutions for combating known diseases.

They support all marine life and yet we know next to nothing about them. They are marine microbes - tiny, microscopic organisms that feed ecosystems, consume waste, and act as living lungs for the planet.

How is it that scientists know so little about what are undoubtedly the most important marine organisms?

As the name suggests, marine micro-organisms are minute and therefore very difficult to study. Apart from being hard to see, they are also difficult to collect and grow in a laboratory.

“I make no apologies for putting microorganisms on a pedestal above all other living things. For if the last blue whale choked to death on the last panda, it would be disastrous but not the end of the world. But if we accidentally poisoned the last two species of ammonia-oxidisers, that would be another matter. It could be happening now and we wouldn’t even know…”

- From Tom Curtis (July 2006) in Nature Reviews Microbiology Vol 4, Issue 488

It is only recently that science has developed the technology to conduct large-scale (more than a few litres of seawater) studies on these tiny creatures. Even today, researchers can only grow between 0.1-10% percent of what exists in the oceans. In fact, we know more about distant stars and planets than we do about the microbes living in our oceans.

Scientists from AIMS grow marine pathogens like these Vibrio bacteria in the laboratory in order to learn more about their role in causing marine disease.

Scientists from AIMS grow marine pathogens like these Vibrio bacteria in the laboratory in order to learn more about their role in causing marine disease. Photo: Matthew Payne.

Marine microbes – the final frontier for marine science

While marine science has historically focused its efforts on large charismatic marine creatures (such as seals, whales, coral reefs), or economically important food species (rock lobster, fish, abalone), we need to know more about the invisible creatures of the sea that provide the living backdrop against which all these species and their ecosystems hang in balance – and we need to know now.

Today’s top marine scientists are warning that life under the sea is changing as a result of human activities on land which lead to global warming, pollution, overfishing and other threats to marine life. Evidence of these impacts has been seen in the decline of world fisheries, loss of coastal biodiversity, and increased outbreaks of marine diseases which lead to mass species die-off. However, the effect of such changes on the marine microbial community, the greatest biological component of all marine systems, remains unknown.

Marine microbes may act as early warning indicators of stress in marine systems and are likely to be the best indicators of ocean health, yet we have not managed to harness their predictive capabilities.

Pioneering work focusing on tropical marine microbial ecology by the Australian Institute of Marine Science is helping researchers and resource managers to better understand the critical role marine microbes play in ocean processes.

Tiny marine microbes are the main cause of disease in the oceans.

Tiny marine microbes are the main cause of disease in the oceans. Photo: David Bourne

What is a microbe?

The term ‘microbe’ generally encompasses all living organisms that are invisible to the naked human eye. Marine microbes include bacteria, fungi, algae, and various types of plankton. Although they are considered non-living, viruses may also be referred to by some scientists as microbes.

In this image of seawater, taken on a special microscope used to view fluorescent light, tiny marine plankton called diatoms (green and light pink) swarm around rod-shaped (bright pink) and filamentous (blue) bacteria.

In this image of seawater, taken on a special microscope used to view fluorescent light, tiny marine plankton called diatoms (green and light pink) swarm around rod-shaped (bright pink) and filamentous (blue) bacteria. Photo: Nicole Webster

Microbial Partnerships
Marine microbes are the primary source of food for most marine ecosystems. They convert raw nutrients, minerals, decaying materials and light from the sun into energy. Many marine organisms depend on microbes to survive and as a result critical partnerships are formed between microbes and other marine organisms.

Living with corals
The secret of a coral’s success (or failure) is a hot topic in marine science, particularly with the predicted impacts of global warming on coral reefs. One explanation of why some corals are more resilient than others, lies in the integral relationship between corals and single-celled microscopic algae (called zooxanthellae) that live within their tissues.

Zooxanthellae (like plants) use photosynthesis to provide the coral with nutrition. In exchange, the coral provides them with a safe home and some essential nutrients.

Several studies have shown that the particular type of zooxanthellae a coral possesses, may determine the coral’s physiological characteristics. For example, corals hosting one type of zooxanthellae might grow fast while corals with another type may be able to tolerate more extreme temperatures.

Some corals have been shown to host multiple types of zooxanthellae that can be "shuffled" according to varying environmental conditions. These corals are particularly resilient to bleaching.

Increased stress to corals caused by increasing sea surface temperatures and other human impacts can cause the delicate coral/algal relationship to deteriorate which increases the coral’s vulnerability to disease. Mass coral die offs have been recorded in the Caribbean and AIMS researches are studying the coral/algal relationship in an effort to understand the potential impacts of climate change on coral reefs and the prospective threat of disease outbreaks to the Great Barrier Reef.

Tiny algae living within this coral polyp may play a key role in its ability to withstand rising ocean temperatures.

Tiny algae living within this coral polyp may play a key role in its ability to withstand rising ocean temperatures. For this reason, the coral-algae relationship is a key focus of research at AIMS.  Photo: Karin Ulstrup

Living with sponges
Two of the oldest known life forms on earth are living together in a de facto relationship that has attracted the attention of scientists and pharmaceutical companies alike. A special relationship between certain types of microbes and sponges has been forged over evolutionary time. Microbes (which evolved over 3.5 billion years ago) and sponges (one of the first animal groups - more than 800 million years old) represent two of the oldest types of organisms on the planet.

The partnerships between sponges and microbes appear to be highly complex associations where both organisms benefit. By working together, both sponges and their live-in microbes are better able to withstand environmental conditions, disease and predation.

The sponge (like corals) can receive nutrients from the microbe with some sponges actually ‘farming’ bacteria inside their tissues. The sponge may use defensive chemicals created by the bacteria (a subject of much medical research) to defend its own tissue from predators. In exchange, the microbe gets a comfortable home inside the sponge.

These tiny bacteria (black) are living within the tissue of a marine sponge.

These tiny bacteria (black) are living within the tissue of a marine sponge. Photo: Nicole Webster

Drug discovery and disease
With more than a billion micro-organisms living in one cubic litre of seawater, the biodiversity of these mighty midgets is unparalleled. For this reason marine scientists are avidly searching the seas for microbes that may lead to the development of new drugs.

The sponge/microbe combination is a rich source of chemicals and more than 30 compounds are currently undergoing clinical trials as anti-cancer drugs. The compounds appear to be generated by the animals as natural defences against fungal or bacterial infections and cell mutation.

In addition to holding potential cures for human disease, marine microbes are also the cause of many pathogenic infections. For example, the bacteria responsible for causing cholera and related diseases (Vibrio cholerae and Vibrio vulnificus) are widespread in our oceans. These microbes erupt in blooms (which are expected to increase in frequency with global warming) and spread disease. Understanding marine microbes and tracking algal blooms is providing scientists with ways of predicting where and when disease outbreaks are likely to occur.

Other marine micro-organisms produce toxins when they bloom. For example, blooms of toxic algae are consumed by tiny crustaceans which are in turn consumed by fish and then by humans. Researchers from AIMS are working to develop biosensors to detect harmful compounds in food.

Marine microbes are also known to cause mass outbreaks of disease in corals and sponges - two key marine animals. In Australasian aquaculture, viral infections have lead to mass death of pilchards in southern Australia and throughout New Zealand. Outbreaks of white spot (another viral infection) are devastating prawn farms worldwide.

AIMS research has also shown that filamentous bacteria residing within hatchery tanks can become tangled around the mouthparts of baby lobsters, preventing them from feeding and making the larvae susceptible to bacterial infections which lead to death. New ventures in Australia’s aquaculture industry will be focused on understanding the role of microbes in the life cycles of aquaculture animals.

Climate change: The microbial perspective
The microbial life on our planet plays a central role in either accentuating or mitigating the effects of climate change. Microbes are central to global systems such as the cycling of carbon, nitrogen, and other gases through the environment. Climate change is likely to have significant impacts on marine microbes, potentially altering their diversity, function and community dynamics.

Changes in temperature, nutrient availability and environmental pH could alter microbial processes. Any change in microbial cycles that determine ocean chemistry could have an influence on the earth’s climate. These small organisms could ultimately become the biggest players in efforts to mediate climate change.

AIMS scientists are attempting to better understand the role of marine microbes in climate change in order to develop early warning indicators of environmental health in tropical marine ecosystems.

While microbes can live without humans, we are totally dependent upon them for our continued survival.